Interactive Peptide Spectral Annotator (IPSA)
Brademan, Riley, Kwiecien, Coon Interactive Peptide Spectral Annotator: a versatile web-based tool for proteomic applications. Molecular & Cellular Proteomics 2019. doi: 10.1074/mcp.TIR118.001209
Tools
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Graphical abstract, Brademan et al., Mol Cell Proteomics 2019 -
Graphical abstract, Brademan et al., Patterns 2020 Coon Lab Data Online
Brademan et al. Argonaut: a web platform for collaborative multi-omic data visualization and exploration. Patterns 2020. doi: 10.1016/j.patter.2020.100122
Data from our papers
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Graphical abstract, Overmyer et al., Cell Syst 2021 COVID-19 Multi-Omics
Overmyer, Shishkova, Miller et al. Large-scale multi-omic analysis of COVID-19 severity. Cell Systems 2021. doi: 10.1016/j.cels.2020.10.003
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Figure 1, Anderson et al., Arterioscler Thromb Vasc Biol 2026 Gut lymph multi-omics data viewer
Anderson et al. Proteomic and lipidomic atlas of gut-associated lymph and venous depots in female piglets. Arteriosclerosis, Thrombosis, and Vascular Biology 2026. doi: 10.1161/ATVBAHA.125.323883
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Figure 1, Kraus, He et al., Sci Adv 2025 Proteo-lipidomic Profiling
Kraus, He et al. Global cellular proteo-lipidomic profiling of diverse lysosomal storage disease mutants using nMOST. Science Advances 2025. doi: 10.1126/sciadv.adu5787
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Figure 1, Sinitcyn et al., Nat Biotechnol 2023 Deep Sequencing Data Browser
Sinitcyn et al. Global detection of human variants and isoforms by deep proteome sequencing. Nature Biotechnology 2023. doi: 10.1038/s41587-023-01714-x
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Figure 1, Rensvold et al., Nature 2022 MITOMICS
Rensvold, Shishkova, Sverchkov et al. Defining mitochondrial protein functions through deep multiomic profiling. Nature 2022. doi: 10.1038/s41586-022-04765-3
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Figure 1, Linke et al., Nat Metab 2020 Lipid Genie
Linke, Overmyer, Miller et al. A large-scale genome-lipid association map guides lipid identification. Nature Metabolism 2020. doi: 10.1038/s42255-020-00278-3
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Graphical abstract, Veling et al., Mol Cell 2017 Mitochondrial Protease Profiling
Veling et al. Multi-omic mitoprotease profiling defines a role for Oct1p in coenzyme Q production. Molecular Cell 2017. doi: 10.1016/j.molcel.2017.11.023
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Figure 1, Stefely et al., Nat Biotechnol 2016 The Y3K Project
Stefely et al. Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling. Nature Biotechnology 2016. doi: 10.1038/nbt.3683